PoplarV1, Main, Exploration, bibRecord, 001A96

The salinity tolerant poplar database (STPD): a comprehensive database for studying tree salt-tolerant adaption and poplar genomics.

Identifieur interne : 001A96 ( Main/Exploration ); précédent : 001A95; suivant : 001A97

The salinity tolerant poplar database (STPD): a comprehensive database for studying tree salt-tolerant adaption and poplar genomics.

Auteurs : Yazhen Ma [République populaire de Chine] ; Ting Xu [République populaire de Chine] ; Dongshi Wan [République populaire de Chine] ; Tao Ma [République populaire de Chine] ; Sheng Shi [République populaire de Chine] ; Jianquan Liu [République populaire de Chine] ; Quanjun Hu [République populaire de Chine]

Source :

BMC genomics [ 1471-2164 ] ; 2015.

RBID : pubmed:25881271

Descripteurs français

KwdFr :
- Adaptation physiologique (effets des médicaments et des substances chimiques), Bases de données génétiques (MeSH), Génome végétal (MeSH), Génomique (MeSH), Interface utilisateur (MeSH), Internet (MeSH), Populus (génétique), Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques), Sels (pharmacologie), Sol (composition chimique).
MESH :
- composition chimique : Sol.
- effets des médicaments et des substances chimiques : Adaptation physiologique, Régulation de l'expression des gènes végétaux.
- génétique : Populus.
- pharmacologie : Sels.
- Bases de données génétiques, Génome végétal, Génomique, Interface utilisateur, Internet.

English descriptors

KwdEn :
- Adaptation, Physiological (drug effects), Databases, Genetic (MeSH), Gene Expression Regulation, Plant (drug effects), Genome, Plant (MeSH), Genomics (MeSH), Internet (MeSH), Populus (genetics), Salts (pharmacology), Soil (chemistry), User-Computer Interface (MeSH).
MESH :
- chemical , chemistry : Soil.
- chemical , pharmacology : Salts.
- drug effects : Adaptation, Physiological, Gene Expression Regulation, Plant.
- genetics : Populus.
- Databases, Genetic, Genome, Plant, Genomics, Internet, User-Computer Interface.

Abstract

BACKGROUND

Soil salinity is a significant factor that impairs plant growth and agricultural productivity, and numerous efforts are underway to enhance salt tolerance of economically important plants. Populus species are widely cultivated for diverse uses. Especially, they grow in different habitats, from salty soil to mesophytic environment, and are therefore used as a model genus for elucidating physiological and molecular mechanisms of stress tolerance in woody plants.

DESCRIPTION

The Salinity Tolerant Poplar Database (STPD) is an integrative database for salt-tolerant poplar genome biology. Currently the STPD contains Populus euphratica genome and its related genetic resources. P. euphratica, with a preference of the salty habitats, has become a valuable genetic resource for the exploitation of tolerance characteristics in trees. This database contains curated data including genomic sequence, genes and gene functional information, non-coding RNA sequences, transposable elements, simple sequence repeats and single nucleotide polymorphisms information of P. euphratica, gene expression data between P. euphratica and Populus tomentosa, and whole-genome alignments between Populus trichocarpa, P. euphratica and Salix suchowensis. The STPD provides useful searching and data mining tools, including GBrowse genome browser, BLAST servers and genome alignments viewer, which can be used to browse genome regions, identify similar sequences and visualize genome alignments. Datasets within the STPD can also be downloaded to perform local searches.

CONCLUSIONS

A new Salinity Tolerant Poplar Database has been developed to assist studies of salt tolerance in trees and poplar genomics. The database will be continuously updated to incorporate new genome-wide data of related poplar species. This database will serve as an infrastructure for researches on the molecular function of genes, comparative genomics, and evolution in closely related species as well as promote advances in molecular breeding within Populus. The STPD can be accessed at http://me.lzu.edu.cn/stpd/ .

DOI: 10.1186/s12864-015-1414-7
PubMed: 25881271
PubMed Central: PMC4372326

Affiliations:

République populaire de Chine

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Le document en format XML

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<term>Databases, Genetic (MeSH)</term>
<term>Gene Expression Regulation, Plant (drug effects)</term>
<term>Genome, Plant (MeSH)</term>
<term>Genomics (MeSH)</term>
<term>Internet (MeSH)</term>
<term>Populus (genetics)</term>
<term>Salts (pharmacology)</term>
<term>Soil (chemistry)</term>
<term>User-Computer Interface (MeSH)</term>
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<term>Bases de données génétiques (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Génomique (MeSH)</term>
<term>Interface utilisateur (MeSH)</term>
<term>Internet (MeSH)</term>
<term>Populus (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (effets des médicaments et des substances chimiques)</term>
<term>Sels (pharmacologie)</term>
<term>Sol (composition chimique)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Soil</term>
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<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Salts</term>
</keywords>
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<keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Adaptation, Physiological</term>
<term>Gene Expression Regulation, Plant</term>
</keywords>
<keywords scheme="MESH" qualifier="effets des médicaments et des substances chimiques" xml:lang="fr"><term>Adaptation physiologique</term>
<term>Régulation de l'expression des gènes végétaux</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term>
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<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr"><term>Sels</term>
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<term>Genome, Plant</term>
<term>Genomics</term>
<term>Internet</term>
<term>User-Computer Interface</term>
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<term>Génome végétal</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Soil salinity is a significant factor that impairs plant growth and agricultural productivity, and numerous efforts are underway to enhance salt tolerance of economically important plants. Populus species are widely cultivated for diverse uses. Especially, they grow in different habitats, from salty soil to mesophytic environment, and are therefore used as a model genus for elucidating physiological and molecular mechanisms of stress tolerance in woody plants.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>DESCRIPTION</b>
</p>
<p>The Salinity Tolerant Poplar Database (STPD) is an integrative database for salt-tolerant poplar genome biology. Currently the STPD contains Populus euphratica genome and its related genetic resources. P. euphratica, with a preference of the salty habitats, has become a valuable genetic resource for the exploitation of tolerance characteristics in trees. This database contains curated data including genomic sequence, genes and gene functional information, non-coding RNA sequences, transposable elements, simple sequence repeats and single nucleotide polymorphisms information of P. euphratica, gene expression data between P. euphratica and Populus tomentosa, and whole-genome alignments between Populus trichocarpa, P. euphratica and Salix suchowensis. The STPD provides useful searching and data mining tools, including GBrowse genome browser, BLAST servers and genome alignments viewer, which can be used to browse genome regions, identify similar sequences and visualize genome alignments. Datasets within the STPD can also be downloaded to perform local searches.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>A new Salinity Tolerant Poplar Database has been developed to assist studies of salt tolerance in trees and poplar genomics. The database will be continuously updated to incorporate new genome-wide data of related poplar species. This database will serve as an infrastructure for researches on the molecular function of genes, comparative genomics, and evolution in closely related species as well as promote advances in molecular breeding within Populus. The STPD can be accessed at http://me.lzu.edu.cn/stpd/ .</p>
</div>
</front>
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<DateCompleted><Year>2016</Year>
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<PubDate><Year>2015</Year>
<Month>Mar</Month>
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<Title>BMC genomics</Title>
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<ArticleTitle>The salinity tolerant poplar database (STPD): a comprehensive database for studying tree salt-tolerant adaption and poplar genomics.</ArticleTitle>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Soil salinity is a significant factor that impairs plant growth and agricultural productivity, and numerous efforts are underway to enhance salt tolerance of economically important plants. Populus species are widely cultivated for diverse uses. Especially, they grow in different habitats, from salty soil to mesophytic environment, and are therefore used as a model genus for elucidating physiological and molecular mechanisms of stress tolerance in woody plants.</AbstractText>
<AbstractText Label="DESCRIPTION" NlmCategory="METHODS">The Salinity Tolerant Poplar Database (STPD) is an integrative database for salt-tolerant poplar genome biology. Currently the STPD contains Populus euphratica genome and its related genetic resources. P. euphratica, with a preference of the salty habitats, has become a valuable genetic resource for the exploitation of tolerance characteristics in trees. This database contains curated data including genomic sequence, genes and gene functional information, non-coding RNA sequences, transposable elements, simple sequence repeats and single nucleotide polymorphisms information of P. euphratica, gene expression data between P. euphratica and Populus tomentosa, and whole-genome alignments between Populus trichocarpa, P. euphratica and Salix suchowensis. The STPD provides useful searching and data mining tools, including GBrowse genome browser, BLAST servers and genome alignments viewer, which can be used to browse genome regions, identify similar sequences and visualize genome alignments. Datasets within the STPD can also be downloaded to perform local searches.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">A new Salinity Tolerant Poplar Database has been developed to assist studies of salt tolerance in trees and poplar genomics. The database will be continuously updated to incorporate new genome-wide data of related poplar species. This database will serve as an infrastructure for researches on the molecular function of genes, comparative genomics, and evolution in closely related species as well as promote advances in molecular breeding within Populus. The STPD can be accessed at http://me.lzu.edu.cn/stpd/ .</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Yazhen</ForeName>
<Initials>Y</Initials>
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<Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Ting</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Molecular Ecology Group, State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, China. xuting19901001@gmail.com.</Affiliation>
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<Author ValidYN="Y"><LastName>Wan</LastName>
<ForeName>Dongshi</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Molecular Ecology Group, State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, China. wandsh@lzu.edu.cn.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Ma</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Molecular Ecology Group, State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, China. matao.yz@gmail.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shi</LastName>
<ForeName>Sheng</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Molecular Ecology Group, State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, China. ss871122@126.com.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Jianquan</ForeName>
<Initials>J</Initials>
<AffiliationInfo><Affiliation>Molecular Ecology Group, State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, China. liujq@lzu.edu.cn.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Hu</LastName>
<ForeName>Quanjun</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>Molecular Ecology Group, State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, 730000, Gansu, China. huquanjun@gmail.com.</Affiliation>
</AffiliationInfo>
</Author>
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<Language>eng</Language>
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<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
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<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>03</Month>
<Day>17</Day>
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<MedlineJournalInfo><Country>England</Country>
<MedlineTA>BMC Genomics</MedlineTA>
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<ReferenceList><Reference><Citation>Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17526522</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Annu Rev Plant Biol. 2007;58:435-58</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17280524</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2009 Jul 15;25(14):1754-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19451168</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Biol (Stuttg). 2010 Mar;12(2):317-33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20398238</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Curr Protoc Bioinformatics. 2010 Sep;Chapter 9:Unit 9.12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20836076</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Genet. 2011 May;43(5):491-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21478889</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2011 Nov 1;27(21):2987-93</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21903627</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2012 Apr;194(1):129-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22126133</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):12219-24</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22778405</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nat Commun. 2013;4:2797</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24256998</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2014 May 1;30(9):1236-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24451626</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2014;15:337</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24886148</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2014 Aug;31(8):2094-107</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24803640</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Cell Res. 2014 Oct;24(10):1274-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24980958</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2002 Oct;12(10):1599-610</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12368253</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Exp Bot. 2004 Feb;55(396):307-19</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14718494</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Plant Physiol. 2005 Dec;139(4):1762-72</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16299175</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2006 Sep 15;313(5793):1596-604</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16973872</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Methods Mol Biol. 2007;395:221-36</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17993677</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
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The salinity tolerant poplar database (STPD): a comprehensive database for studying tree salt-tolerant adaption and poplar genomics.

The salinity tolerant poplar database (STPD): a comprehensive database for studying tree salt-tolerant adaption and poplar genomics.

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